Exploring Information Technologies to Support Shotgun Proteomics

Shotgun proteomics refers to the direct analysis of complex protein mixtures to create a profile of the proteins present in the cell. These profiles can be used to study the underlying biological basis for cancer development. Closely studying the profiles as the cancer proliferates reveals the molecular interactions in the cell. They provide clues to researchers on potential drug targets to treat the disease. A little more than a decade old, shotgun proteomics is a relatively new form of discovery, one that is data intensive and requires complex data analysis. Early studies indicated a gap between the ability to analyze biological samples with a mass spectrometer and the information systems available to process and analyze this data. This thesis reflects on an automated proteomic information system at the University of Colorado Central Analytical Facility. Investigators there are using cutting edge proteomic techniques to analyze melanoma cell lines responsible for skin cancer in patients. The paper will provide insight on key design processes in the development of an Oracle relational database and automation system to support high-throughput shotgun proteomics in the facility. It will also discuss significant contributions, technologies, software, a data standard, and leaders in the field developing solutions and products in proteomics

Infrared spectroscopy of NGC 1068: Probing the obscured ionizing AGN continuum

The ISO-SWS 2.5-45 um infrared spectroscopic observations of the nucleus of the Seyfert 2 galaxy NGC 1068 (see companion paper) are combined with a compilation of UV to IR narrow emission line data to determine the spectral energy distribution (SED) of the obscured extreme-UV continuum that photoionizes the narrow line emitting gas in the active galactic nucleus. We search a large grid of gas cloud models and SEDs for the combination that best reproduces the observed line fluxes and NLR geometry. Our best fit model reproduces the observed line fluxes to better than a factor of 2 on average and is in general agreement with the observed NLR geometry. It has two gas components that are consistent with a clumpy distribution of dense outflowing gas in the center and a more extended distribution of less dense and more clumpy gas farther out that has no net outflow. The best fit SED has a deep trough at ~4 Ryd, which is consistent with an intrinsic Big Blue Bump that is partially absorbed by ~6x10^19 cm^-2 of neutral hydrogen interior to the NLR.Comment: 15 pp, 4 figures, ApJ accepte

Diagnostico situacional sobre la fecundidad como problema de salud pública

Graficas, tablas, encuestaLa planificación familiar es un derecho que tiene todo hombre y toda mujer a decidir voluntariamente en qué momento y cuántos hijos desean y puedan tener. Toda pareja debe definir cuándo, cómo y con qué planificar el nacimiento de sus hijos puesto que son ellos responsables de velar por su bienestar. Estos planes no solo ayudan a prevenir embarazos no deseados, sino también a proteger la salud de las mujeres, espaciar el nacimiento de sus hijos, evitar abortos clandestinos así como infecciones de transmisión sexual como el VIH. La planificación familiar contribuye a mejorar la calidad de vida de los seres humanos, evitando embarazos no deseados, permitiendo a las parejas programar su descendencia. Los jóvenes pueden dedicar su tiempo y su esfuerzo a su capacitación y aprendizaje. Los padres con menor número de hijos tienen una mejor capacidad de proveer alimento, ropa, salud, vivienda y educación a sus niños. Los métodos de planificación familiar protegen la vida de la mujer con alto riesgo materno. Hacia el futuro solo la planificación familiar, podrá garantizar la supervivencia de la humanidad, ya que ante recursos naturales escasos como el agua y los suelos fértiles, el crecimiento demográfico no controlado disminuye la oportunidad de vida en el planeta.No Abstrac

J/psi suppression at forward rapidity in Au+Au collisions at sqrt(s_NN)=39 and 62.4 GeV

We present measurements of the J/psi invariant yields in sqrt(s_NN)=39 and 62.4 GeV Au+Au collisions at forward rapidity (1.2<|y|<2.2). Invariant yields are presented as a function of both collision centrality and transverse momentum. Nuclear modifications are obtained for central relative to peripheral Au+Au collisions (R_CP) and for various centrality selections in Au+Au relative to scaled p+p cross sections obtained from other measurements (R_AA). The observed suppression patterns at 39 and 62.4 GeV are quite similar to those previously measured at 200 GeV. This similar suppression presents a challenge to theoretical models that contain various competing mechanisms with different energy dependencies, some of which cause suppression and others enhancement.Comment: 365 authors, 10 pages, 11 figures, 4 tables. Submitted to Phys. Rev. C. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.htm

Search for Top Squark Pair Production in the Dielectron Channel

This report describes the first search for top squark pair production in the channel stop_1 stopbar_1 -> b bbar chargino_1 chargino_1 -> ee+jets+MEt using 74.9 +- 8.9 pb^-1 of data collected using the D0 detector. A 95% confidence level upper limit on sigma*B is presented. The limit is above the theoretical expectation for sigma*B for this process, but does show the sensitivity of the current D0 data set to a particular topology for new physics.Comment: Five pages, including three figures, submitted to PRD Brief Report

Cross Section and Transverse Single-Spin Asymmetry of η\eta Mesons in p↑+pp^{\uparrow}+p Collisions at s=200\sqrt{s}=200 GeV at Forward Rapidity

We present a measurement of the cross section and transverse single-spin asymmetry ($A_N$) for $\eta$ mesons at large pseudorapidity from $\sqrt{s}=200$~GeV $p^{\uparrow}+p$ collisions. The measured cross section for $0.5<p_T<5.0$~GeV/$c$ and $3.0<|\eta|<3.8$ is well described by a next-to-leading-order perturbative-quantum-chromodynamics calculation. The asymmetries $A_N$ have been measured as a function of Feynman-$x$ ($x_F$) from $0.2<|x_{F}|<0.7$, as well as transverse momentum ($p_T$) from $1.0<p_T<4.5$~GeV/$c$. The asymmetry averaged over positive $x_F$ is $\langle{A_{N}}\rangle=0.061{\pm}0.014$. The results are consistent with prior transverse single-spin measurements of forward $\eta$ and $\pi^{0}$ mesons at various energies in overlapping $x_F$ ranges. Comparison of different particle species can help to determine the origin of the large observed asymmetries in $p^{\uparrow}+p$ collisions.Comment: 484 authors, 13 pages, 11 figures, 4 tables, 2008 data. v2 is version accepted by Phys. Rev. D. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be)publicly available at http://www.phenix.bnl.gov/papers.htm